Harimoto, T., Danino, T. Engineering Bacteria For Cancer Therapy. Emerging Topics In Life Science (2019)


Chowdhury, S., Castro, S., Coker, C., Hinchliffe, T., Arpaia, N.*, Danino, T.* Programmable bacteria induce durable tumor regression and systemic antitumor immunity.  Nature Medicine 25, 1057–1063 (2019)


Harimoto, T., Singer, Z., Velazquez, O., Zhang, J., Castro, S., Hinchliffe, T., Mather, W., Danino, T. Rapid screening of engineered microbial therapies in a 3-D multicellular model. PNAS 1820824116 (2019)

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Gurbatri, C., Coker, C., Hinchliffe, T., Iona, L., Castro, S., Treuting, P., Arpaia, N., Danino, T. Engineered probiotics for local tumor delivery of checkpoint blockade nanobodies. bioRxiv 562785 (2019)


Zhu, S., Deb, D., Danino, T. A spatial cell culture model for predicting chemotherapy dosing strategies. bioRxiv 561746 (2019)


Fedorec, A J.H., Ozdemir, T., Doshi, A., Rosa, L., Velazquez, O., Danino, T., Barnes, C P. Two new plasmid post-segregational killing mechanisms for the implementation of synthetic gene networks in E. coli. iScience (2019),


Ozdemir, T.,  Fedorec, A J.H., Danino, T., Barnes, C P. Synthetic Biology and Engineered Live Biotherapeutics: Toward Increasing System Complexity. Cell Systems 7 (1), 5-16 (2018)


Geller, L.*, Barzily-Rokni, M.*, Danino, T., Shee, K., Thaiss, C., Livny, R., Avraham, R., Barczak, A., Zwang, Y., Mosher, C., Smith, D., Chatman, K., Skalak, M., Bu, J., Cooper, Z., Tompers, F., Ligorio, M., Qian, Z., Muzumdar, M., Michaud, M., Mandinova, A., Garrett, W., Jacks, T., Ogino, Gurbatri, C., S., Ferrone, C., Thayer, S., Warger, J., Trauger, S., Johnston, S., Huttenhower, C., Gevers, D., Bhatia, S., Golub, T. Straussman, R.  Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine. Science  357 (6356), 1156-1160 (2017)


Chien, T.*, Doshi, A.*, Danino, T. Advances in bacterial cancer therapies using synthetic biology. Current Opinions in Systems Biology 5, 1-8 (2017)

Moon, S.*, Fritz, I.*, Singer, Z.*, Danino, T. Controlling spatial patterning of bacteria via screen printing.  3D Printing and Additive Manufacturing. Dec 2016, 3(4): 194-203


Din, O.*, Danino, T.*, Prindle, A., Skalak, M., Selimkhanov, J., Allen, K., Julio, E., Atolia, A., Tsimring, L., Bhatia, S., Hasty, J.  Synchronized cycles of bacterial lysis for in vivo delivery.  Nature 536(7614):81-85 (2016)

Luna, J., Scheel, T., Danino, T., Shaw, K., Takacs, C., Mele, A., Fak, J., Nishiuchi, E., Cantanese, M., Rice, C., Darnell, R.  Hepatitis C virus RNA functionally sequesters miR-122.  Cell  160(6), 1099–1110 (2015)

 Danino, T.*, Prindle, A.*, Kwong, G., Skalak, M., Li, H., Allen, K., Hasty, J., and Bhatia, S. Programmable probiotics for detection of cancer in urineSci. Transl. Med. 7, 289ra84 (2015) 

Danino, T.*, Prindle, A.*, Hasty, J., and Bhatia, S.  Measuring growth and gene expression dynamics of tumor-targeted S. typhimurium bacteria. Journal of Visualized Experiments 77, e50540 (2013)


Prindle, A., Selimkhanov, J.S.,  Danino, T., Samayoa, P., Goldberg, A., Bhatia, S., and Hasty, J.  Synthetic biology in clinically relevant microbes. ACS Synthetic biology 1(10), 458-464 (2012)


Danino, T., Lo, J., Prindle, A., Hasty, J., and Bhatia, S.  In vivo gene expression dynamics from tumor-targeted bacteria. ACS Synthetic biology 1(10), 465-470 (2012)


Cookson, N.A.*, Mather, W.H.*, Danino, T., Mondragón-Palomino, O., Williams, R. J., Tsimring, L. S., and Hasty, J.  Queueing up for enzymatic processing: Correlated signaling through coupled degradation. Molecular Systems Biology 7:561, (2011)


Prindle, A.*, Samayoa, P.*, Razinkov, I., Danino, T., Tsimring, L.S. and Hasty, J.  Sensing array of radically coupled genetic biopixels. Nature 481, 39-44 (2011)

Mondragon-Palomino, O., Danino, T., Selimkhanov, J., Tsimring, L.S., and Hasty, J.  Entrainment of a population of synthetic genetic oscillators. Science 333(6047), 1315-1319 (2011)

Boyer, D., Mather, W., Mondragon-Palomino, O., Orozco-Fuentes, S., Danino, T., Hasty, J., and Tsimring, L. S.  Buckling instability in ordered bacterial colonies. Physical Biology 8, 026008 (2011)

Danino,T., Volfson, D., Bhatia, S., Tsimring, L., and Hasty, J.  In-silico pattern formation of vascular mesenchymal stem-cells in three-dimensions. PLoS ONE 6(5), e20182 (2011)

Mather, W., Mondragon-Palomino, O., Danino, T., Hasty, J., and Tsimring, L.S.  Streaming instability in growing cell populations. 
Physical Review Letters 104(20), 208101 (2010)

Danino, T.*, Mondragon-Palomino, O.*, Tsimring, L., and Hasty, J.  A synchronized quorum of genetic clocks. Nature 463, 326-330 (2010)